Version 0.9.38 (2025/03/29)

* Do not run auto-theta-fix procedure if runType is 'MAIN_WITH_INIT'


Version 0.9.37 (2025/03/09)

* Update dependencies
* Support R 4.4.3
* Post-process final range of years


Version 0.9.36 (2024/06/22)

* Update dependencies
* Support R 4.4.1


Version 0.9.35 (2023/08/20)

* Update dependencies
* Fix setting outputs dependent on probability of presence of CD4 count observations


Version 0.9.34 (2023/06/11)

* Update dependencies
* Support R 4.3.0


Version 0.9.33 (2022/12/04)

* Change dependency management to pak
* Update dependencies


Version 0.9.32 (2022/11/02)

* Update dependencies


Version 0.9.31 (2022/05/20)

* Support specifying precomputed incidence curve as input to FitModel function.


Version 0.9.30 (2022/05/03)

* Update dependencies


Version 0.9.29 (2022/02/27)

* Allow loading a single file
* Update dependencies


Version 0.9.28 (2021/11/30)

* Update dependencies


Version 0.9.27 (2021/10/20)

* Fix performing main fit when fixing thetas


Version 0.9.26 (2021/09/29)

* Update dependencies


Version 0.9.25 (2021/07/14)

* Update dependencies


Version 0.9.24 (2021/05/30)

* Perform sanity checks when loading input data


Version 0.9.22 (2021/04/26)

* Print goodness of fit with running auto-Theta fix


Version 0.9.21 (2021/04/12)

* Update param Theta after fixing small thetas to 0
* Update dependencies


Version 0.9.20 (2021/03/04)

* Update dependencies


Version 0.9.16 (2020/10/05)

* Do not use cli processes (they interfere with shiny app)


Version 0.9.15 (2020/06/16)

* Support silencing messages
* Support run timeout
* Improve performance
* Fix problems with automatic rerunning of simplified models


Version 0.9.14 (2020/04/19)

* Update dependencies
* Improve performance


Version 0.9.13 (2020/02/16)

* Support providing starting beta and thetaF to the main fit


Version 0.9.12 (2020/02/15)

* Support intervals specification as input
* Support loading XML models
* Support risk groups processing
* Support data specified directly in context
* Support fitting model to provided "beta" and "theta" parameters
* Properly initialize "param" and "info" objects for non-NL data


Version 0.9.11 (2019/11/27)

* Remove hard-coded years from ReadInputData


Version 0.9.10 (2019/09/11)

* Support loading data from zipped files/folders
* Support creating plots with and without bootstrap iterations


Version 0.9.9 (2019/08/19)

* Improve performance of fitting
* Support Poisson distribution in boostrap iterations
* Implement computing confidence intervals
* Implement creating output plots


Version 0.4.7 (2019/08/16)

* Improve performance of FitLLMain
* Implement parallel computation of bootstrap iterations


Version 0.4.6 (2019/07/28)

* Implement bootstrap iterations


Version 0.4.5 (2019/07/24)

* Fix calculation of outputs of the main fit


Version 0.4.4 (2019/07/18)

* Calculation of all outputs implemented
* Model run time reduced by 30% compared to version 0.4.2


Version 0.4.3 (2019/06/18)

* Add automated code check and linting using Travis online service
* Reorganize parameters and settings to support providing more input arguments
* Support Negative Binomial distribution
* Implement overdisperion optimization
* Calculate and return model outputs


Version 0.4.2 (2019/05/29)

* Model run time reduced by 30% compared to version 0.4.1


Version 0.4.1 (2019/05/25)

* Main fit run implemented


Version 0.1 (2019/02/18)

* Project intialization
